Experience

Ardigen

• Poland
• Biotechnology Research
• 100 - 200 Employee

• Bioinformatician, Microbiome Research

  • Sep 2019 - Present

  - Working on Linux/ Win10 systems and virtual environments, - performing calculations on HPC/ Kubernetes, - creating and development of scripts for the analysis of data derived from NGS sequencing and biological/ medical databases (TCGA, GTEx, NCBI, Ensembl, KEGG, PATRIC), - creating automated pipelines (NextFlow) and interactive reports (RMarkdown, Jupyter Notebook), - maintaing workspace and software dependencies (Docker, pipenv, renv), - Using Gitlab/ Bitbucket, Jira and Confluence. Show less



National Veterinary Research Institute (PIWet-PIB)

• Poland
• Veterinary Services
• 100 - 200 Employee

• Bioinformatician specialist

  • Sep 2018 - Aug 2019

  - Working on Linux system, - using Bash/AWK/R/Python scripting to analyze NGS data (Illumina Miseq and Oxford Nanopore), - maintaining samples database, - bioinformatics analysis (hybrid assembly, variant calling, phylogenetics, data visualization), - text files preprocessing, - microbiological data research. - Working on Linux system, - using Bash/AWK/R/Python scripting to analyze NGS data (Illumina Miseq and Oxford Nanopore), - maintaining samples database, - bioinformatics analysis (hybrid assembly, variant calling, phylogenetics, data visualization), - text files preprocessing, - microbiological data research.



Instytut Immunologii i Terapii Doświadczalnej PAN

• Lab assistant (Internship)

  • Jul 2017 - Sep 2017

  - ELISA, - Next Generation Sequencing using Oxford Nanopore MinION, - PCR reaction, - electrophoresis, - barcoding, - bioinformatics analysis. - ELISA, - Next Generation Sequencing using Oxford Nanopore MinION, - PCR reaction, - electrophoresis, - barcoding, - bioinformatics analysis.



Queen Mary University of London

• United Kingdom
• Higher Education
• 700 & Above Employee

• Lab assistant (Internship)

  • Jul 2016 - Sep 2016

  - Isolation of LPMCs from biopsy and/or tissue, - isolation of PBMCs from whole blood, - ELISA, - Flowcytometry/ FACS, - Western blot. - Isolation of LPMCs from biopsy and/or tissue, - isolation of PBMCs from whole blood, - ELISA, - Flowcytometry/ FACS, - Western blot.