Experience

Human Biome Institute
• Poland
• Biotechnology Research
• 1 - 100 Employee
• Team Lead

  • Jun 2023 - Present


Jagiellonian University, Malopolska Centre of Biotechnology

• PhD student

  • Oct 2020 - Present

• Phd Researcher Assistant

  • Oct 2020 - Present

  I am currently working in the SONATA grant 'Predicting microbiome changes over time and upon perturbation' where we are building machine learning models that will predict microbiome changes over time using deep learningResponsibilities:*bioinformatics analysis of 16s and shotgun microbiome data*writing statistical pipelines in Python and R*building machine learning models in Python *building deep learning models


EMBL
• Germany
• Research Services
• 700 & Above Employee
• Researcher

  • Sep 2022 - Dec 2022


Ardigen

• Poland
• Biotechnology Research
• 100 - 200 Employee

• Bioinformatics Scientist

  • Feb 2019 - Oct 2020

  Duties: *taxonomic analysis of microbiome sequencing data (WGS, 16S) *functional analysis of microbiome sequencing data *use of machine learning models to find microbial features that are significant in particular indications *pipeline writing in Python language *biologic research Duties: *taxonomic analysis of microbiome sequencing data (WGS, 16S) *functional analysis of microbiome sequencing data *use of machine learning models to find microbial features that are significant in particular indications *pipeline writing in Python language *biologic research



Boost Biotech Poland

• Poland
• Biotechnology Research
• 1 - 100 Employee

• II Polish Biohackaton Coordinator

  • Jan 2019 - Jun 2019

  http://biohack.com.pl/ Biohack is a competition in a form of hackathon within bioinformatics field. Competitors formed teams to take part in the first hackathon aimed for bioinformaticians/biologists/programmers/geneticists in Poland. Each of competing teams received genetic and phenotypic data gathered from all around the country. http://biohack.com.pl/ Biohack is a competition in a form of hackathon within bioinformatics field. Competitors formed teams to take part in the first hackathon aimed for bioinformaticians/biologists/programmers/geneticists in Poland. Each of competing teams received genetic and phenotypic data gathered from all around the country.



CNRS - Centre national de la recherche scientifique Bordeaux Bioinformatics Center

• Graduate Research Intern

  • Oct 2018 - Dec 2018

  Research project "Host-microbiota interplay in metabolic alterations in Crohn's disease" During the internship at CBiB I was working in a project on the analysis of host-microbiome interplay in Crohn's disease patients. Duties: *analysis of human and microbiota mRNA data *building and statistical analysis of metabolic networks (NetworkX and Cystoscape) Research project "Host-microbiota interplay in metabolic alterations in Crohn's disease" During the internship at CBiB I was working in a project on the analysis of host-microbiome interplay in Crohn's disease patients. Duties: *analysis of human and microbiota mRNA data *building and statistical analysis of metabolic networks (NetworkX and Cystoscape)



Ruđer Bošković Institute

• Croatia
• Research
• 400 - 500 Employee

• Graduate Research Intern

  • Aug 2017 - Nov 2017

  Research project "In Depth Analyses of Phytoplankton Community in Northern Pacific During the Sea2Space Particle Investigation” Project funded by a grant from NSF Biological Oceanography, the NASA New Investigator Program, the Croatian Science Foundation and the Schimidt Ocean Institute My duties were: *isolation of genetic material from ocean meta samples *bioinformatics analysis of sequencing data Research project "In Depth Analyses of Phytoplankton Community in Northern Pacific During the Sea2Space Particle Investigation” Project funded by a grant from NSF Biological Oceanography, the NASA New Investigator Program, the Croatian Science Foundation and the Schimidt Ocean Institute My duties were: *isolation of genetic material from ocean meta samples *bioinformatics analysis of sequencing data


Novartis
• Switzerland
• Pharmaceutical Manufacturing
• 700 & Above Employee
• Polish representative during BioCamp

  • May 2017 - May 2017


Polish Academy of Sciences

• Higher Education
• 1 - 100 Employee

• Masters Candidate

  • Sep 2016 - Mar 2017

  Research project ,,Investigation of the RadA protein influence on DNA repair mechanisms in tuberculosis" Duties: *experiments planning *microbial cultures *constructing protein expressing bacterial constructs and mutants *DNA isolation *protein expression and purification Research project ,,Investigation of the RadA protein influence on DNA repair mechanisms in tuberculosis" Duties: *experiments planning *microbial cultures *constructing protein expressing bacterial constructs and mutants *DNA isolation *protein expression and purification



University of Lodz

• Poland
• Higher Education
• 700 & Above Employee

• Student's grant lead

  • Jan 2016 - Jun 2016

  Research project ,, The rating system SOS induction by 1,4-substituted thiosemicarbazide"During the grant for the research project I was investigating the SOS response induction in bacteria after treatment with new antimicrobial compounds.Project was founded by a students grant I have obtained form the Rector of University of Lodz. I have written the project and I was coordinating its workflow.Duties:-experiments planning-RT-PCR-handling of molecular biology experiments Show less

• Student stażysta

  • Jan 2016 - May 2016

  Research project ,,Evaluation of biological properties of derivatives of thiosemicarbazide defined antibacterial activity '’ Department of Microbial Genetics, Faculty of Biology and Environmental Protection, University of Lodz