Zeynep Cakir
Scientist at Link Cell Therapies- Claim this Profile
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English Full professional proficiency
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Turkish Native or bilingual proficiency
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German Limited working proficiency
Topline Score
Bio
Experience
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Link Cell Therapies
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United States
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Biotechnology Research
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1 - 100 Employee
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Scientist
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Jan 2023 - Present
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Gladstone Institutes
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United States
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Research Services
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300 - 400 Employee
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Postdoctoral Fellow
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Feb 2020 - Jan 2023
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UCSF Health
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United States
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Hospitals and Health Care
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700 & Above Employee
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Postdoctoral Fellow
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2018 - 2020
Technical Skills and Competence: • In Vivo: Mouse handling; subcutaneous and orthotopic injections of cancer cells to mice • Cell biology: Isolation of lysosomes from subcut/ortho tumors • Immunohistochemistry • Biochemistry: Immunoprecipitation-Mass Spec, Close proximity Labeling Assays (Turboid, BioID), Post Translational Modification analysis- Mass Spec • Cell Culture: Generation of stable cell lines- virus production and infection to the cells • Molecular Biology: Site-directed mutagenesis, overlap extension PCR, Isolation and analysis of DNA from cells, designing of primers and probes, molecular cloning, plasmids engineering, DNA sequence analysis, knock-down/overexpression of genes
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The University of Freiburg
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Germany
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Research Services
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700 & Above Employee
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PhD
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2011 - Nov 2016
Main research project: Dissecting the regulation of the pro-apoptotic Bcl-2 protein Bax in mammalian cells. Technical Skills and Competence: • Cell Biology: Extensive cell culture experience in different cell lines and primary cell lines, chemical/liposome based transfections, • Cell Based Assays: Bacterial transformations, apoptotic assays-measurement of caspase3/7 activity, cytochrome c release assays, clonogenic cell survival assay • Molecular Biology: Site-directed mutagenesis, overlap extension PCR, Isolation and analysis of DNA from cells, designing of primers and probes, molecular cloning, plasmids engineering, DNA sequence analysis • Biochemistry Analysis: SDS-PAGE, Western Blot, Immunoprecipitation, Immunocytochemistry, whole cell lysate extraction, preparation of mitochondrial fraction from cells/tissue, ubiquitination assay, separation of soluble mitochondrial proteins from insoluble proteins, Native-page, BirA fusion assay, separation of phosphorylated proteins (Phos-tag gels) • Protein Biochemistry: 3D structure analysis and structure based protein manipulations • Imaging: Fluorescence Microscopy
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İzmir Institute of Technology
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Research Services
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200 - 300 Employee
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Research Assistant
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Sep 2008 - Jan 2011
Main research project: Investigating the involvement of ceramides and their metabolic products in drug induced cell death and resistance in leukemia cell lines • Identified therapeutic potential of adipose-derived mesenchymal stromal cells in the treatment of bone injuries. • Additional collaborative projects: Understanding the roles of STAT5A and topoisomerases in the chemotherapeutic sensitive/resistant chronic myeloid leukemia Technical Skills and Competence: • Cell Biology: Isolation of mesenchymal stromal cells from the adipose tissue and differentiation into the osteoblasts, cell culture experience in different leukemia cell lines and leukemia cells derived from patients, chemical/liposome based transfections, generation of modified cell lines with shRNAs/siRNAs, • Cell Based Assays: 96-well format MTT assay to measure cell proliferation and IC50 of drugs- analysis of sensitivity/resistance to the drugs, apoptotic assays-measurement of caspase3/7 activity and mitochondrial membrane potential • Molecular Biology: Isolation and analysis of DNA and RNA from cells, design of primers and probes, PCR, qPCR, molecular cloning, DNA sequence analysis, • Biochemistry Analysis: SDS-PAGE, Western Blot
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Education
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The University of Freiburg
Doctor of Philosophy (PhD), Biochemistry -
İzmir Yüksek Teknoloji Enstitüsü
Master of Science (MSc), Molecular Biology and Genetics -
Ege Üniversitesi
Bachelor's degree, Biochemistry -
bodrum anadolu lisesi
High School Diploma