Zach Augenfeld, PhD
Senior Scientific Software Engineer at Ganymede- Claim this Profile
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Bio
Anthony Agnello
I had the pleasure of working with Zach at Eventide. Zach has a rare combination of enthusiasm and level-headedness. Zach is smart and diligent with excellent communication skills. He would be a great addition to any team.
Anthony Agnello
I had the pleasure of working with Zach at Eventide. Zach has a rare combination of enthusiasm and level-headedness. Zach is smart and diligent with excellent communication skills. He would be a great addition to any team.
Anthony Agnello
I had the pleasure of working with Zach at Eventide. Zach has a rare combination of enthusiasm and level-headedness. Zach is smart and diligent with excellent communication skills. He would be a great addition to any team.
Anthony Agnello
I had the pleasure of working with Zach at Eventide. Zach has a rare combination of enthusiasm and level-headedness. Zach is smart and diligent with excellent communication skills. He would be a great addition to any team.
Experience
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Ganymede
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United States
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Software Development
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1 - 100 Employee
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Senior Scientific Software Engineer
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Aug 2023 - Present
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454 Bio
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Biotechnology Research
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1 - 100 Employee
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Senior Systems Engineer
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Sep 2022 - Jul 2023
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Detect
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United States
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Biotechnology Research
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1 - 100 Employee
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Senior Systems Engineer
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Sep 2021 - Sep 2022
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Yale University
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United States
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Higher Education
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700 & Above Employee
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Graduate Student Research Assistant
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Sep 2014 - May 2020
• Developed first ever real-time automated multimodal registration framework to guide transcatheter arterial chemoembolization (TACE) by aligning MRIs to cone-beam CT images • Collaborated directly with oncologists and interventional radiologists to train convolutional neural networks (CNNs) to perform liver and tumor segmentation (classification) in multiple modalities • Trained and tested U-Nets, GANs, and STNs to benchmark segmentation, image synthesis, and registration • Extensive use of data augmentation, domain adaptation, and transfer learning Show less
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Bay Computer Associates, Inc.
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United States
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Software Development
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1 - 100 Employee
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Firmware / Electronics Engineer
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Jun 2011 - Aug 2013
• Developed PWM pump controller for embedded FDA-compliant left ventricular assist device • Implemented FPGA-based beamfocusing control system for scanning electron microscope • Upgraded 68HC11-based magnetic flow process control devices to utilize ARM microcontrollers • Developed PWM pump controller for embedded FDA-compliant left ventricular assist device • Implemented FPGA-based beamfocusing control system for scanning electron microscope • Upgraded 68HC11-based magnetic flow process control devices to utilize ARM microcontrollers
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Eventide Audio
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United States
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Music
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1 - 100 Employee
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DSP / Software Engineer
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Nov 2007 - Jan 2009
• Optimized audio effects algorithms in DSP assembly and proprietary design software • Implemented USB/IEEE 1394/MIDI interface for cross-platform update utility application • Designed and built automated testing system used for audio diagnostics and quality control • Tested and fixed bugs in multi-platform Pro Tools TDM plug-ins • Optimized audio effects algorithms in DSP assembly and proprietary design software • Implemented USB/IEEE 1394/MIDI interface for cross-platform update utility application • Designed and built automated testing system used for audio diagnostics and quality control • Tested and fixed bugs in multi-platform Pro Tools TDM plug-ins
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Brown University
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United States
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Higher Education
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700 & Above Employee
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Computer Help Desk Manager
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Sep 2004 - Nov 2007
• Started as a consultant resolving computer problems over the phone and on-site • Promoted to manager in 2006 to supervise, train, and prepare staff of 15 consultants for on-site computer maintenance appointments • Started as a consultant resolving computer problems over the phone and on-site • Promoted to manager in 2006 to supervise, train, and prepare staff of 15 consultants for on-site computer maintenance appointments
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Education
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Yale University
Doctor of Philosophy (PhD), Biomedical Engineering -
New York University - Polytechnic School of Engineering
Master of Science - MS, Electrical Engineering -
Brown University
Bachelor of Science - BS, Electrical Engineering -
Brooklyn Technical High School
Electrical & Electronics Engineering Major