Sumitabha Brahmachari
Postdoctoral Researcher at Rice University- Claim this Profile
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Bio
Credentials
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Generative Deep Learning with Tensorflow
DeepLearning.AIFeb, 2023- Oct, 2024 -
Algorithms for DNA sequencing
CourseraJan, 2023- Oct, 2024 -
Convolutional Neural Networks
DeepLearning.AIAug, 2022- Oct, 2024 -
Structuring Machine Learning Projects
DeepLearning.AIJul, 2022- Oct, 2024 -
Improving Deep Neural Networks: Hyperparameter Tuning, Regularization and Optimization
DeepLearning.AIJun, 2022- Oct, 2024 -
Neural Networks and Deep Learning
DeepLearning.AIJun, 2022- Oct, 2024
Experience
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Rice University
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United States
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Higher Education
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700 & Above Employee
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Postdoctoral Researcher
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Sep 2018 - Present
- Developed Molecular Dynamics simulation models (OpenMM, GROMACs) of chromosomes to elucidate physical principles underlying genome organization. Currently working on adding nonequilibrium features to the model. - Hands-on experience analyzing genomic datasets, such as Hi-C, ChIP-seq, and RNA-seq to refine model features - Collaborated with a team of international researchers, including experimentalists, to understand the genome architectural variants observed across species. -… Show more - Developed Molecular Dynamics simulation models (OpenMM, GROMACs) of chromosomes to elucidate physical principles underlying genome organization. Currently working on adding nonequilibrium features to the model. - Hands-on experience analyzing genomic datasets, such as Hi-C, ChIP-seq, and RNA-seq to refine model features - Collaborated with a team of international researchers, including experimentalists, to understand the genome architectural variants observed across species. - Modeled the mechanical interplay between DNA/chromatin mechanics and RNAP translocation to elucidate the importance of mechanics in transcription. - Mentored graduate and undergraduate students and actively participated in Science Outreach Show less - Developed Molecular Dynamics simulation models (OpenMM, GROMACs) of chromosomes to elucidate physical principles underlying genome organization. Currently working on adding nonequilibrium features to the model. - Hands-on experience analyzing genomic datasets, such as Hi-C, ChIP-seq, and RNA-seq to refine model features - Collaborated with a team of international researchers, including experimentalists, to understand the genome architectural variants observed across species. -… Show more - Developed Molecular Dynamics simulation models (OpenMM, GROMACs) of chromosomes to elucidate physical principles underlying genome organization. Currently working on adding nonequilibrium features to the model. - Hands-on experience analyzing genomic datasets, such as Hi-C, ChIP-seq, and RNA-seq to refine model features - Collaborated with a team of international researchers, including experimentalists, to understand the genome architectural variants observed across species. - Modeled the mechanical interplay between DNA/chromatin mechanics and RNAP translocation to elucidate the importance of mechanics in transcription. - Mentored graduate and undergraduate students and actively participated in Science Outreach Show less
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Northwestern University
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United States
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Higher Education
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700 & Above Employee
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Graduate Researcher
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Sep 2013 - Aug 2018
- Proposed statistical-mechanical models to explain experimental signatures of mechanically perturbed DNA. - Worked closely with experimentalists (e.g., wrote custom scripts for real-time analysis of experimental data) to verify model predictions. - Published multiple research articles and presented work at various national and international conferences. - Proposed statistical-mechanical models to explain experimental signatures of mechanically perturbed DNA. - Worked closely with experimentalists (e.g., wrote custom scripts for real-time analysis of experimental data) to verify model predictions. - Published multiple research articles and presented work at various national and international conferences.
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Education
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2013 - 2018
Northwestern University
Doctor of Philosophy (Ph.D.), Physics -
2011 - 2013
Indian Institute of Technology, Bombay
Master’s Degree, Physics -
2008 - 2011
Hindu College, University of Delhi
Bachelor's degree, Physics
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