Experience

Jonathan M. Tisch College of Civic Life

• United States
• Higher Education
• 1 - 100 Employee

• Research Assistant, CIRCLE (Data Engineer)

  • Jan 2023 - Present

  -Engineered a large data pipeline (1000+ lines of code) using SQL/MySQL and R. - Processed and analyzed large quantities of genomic data (TBs) from approximately 130 organizations using R Studio and Cloud infrastructure. -Developed data wrangling techniques and statistical analysis workflows to extract meaningful insights from the data. -Engineered a large data pipeline (1000+ lines of code) using SQL/MySQL and R. - Processed and analyzed large quantities of genomic data (TBs) from approximately 130 organizations using R Studio and Cloud infrastructure. -Developed data wrangling techniques and statistical analysis workflows to extract meaningful insights from the data.



Tufts University

• United States
• Higher Education
• 700 & Above Employee

• Research Assistant (Bioinformatics Engineer)

  • May 2021 - Present

  -Conducted genomic analysis of large-scale genetic data projects surrounding infectious disease and genetic analysis of viral interacting proteins. -Utilized Next Generation Sequencing (WES, WGS) for data analysis. -Developed algorithms in Python (Pandas, PyTorch, NumPy, BioCManager) and R (ggplot2, Shiny) for data analysis and statistical modeling. -Presented research results at American Society of Naturalists conference in January 2023 : https://docs.google.com/presentation/d/172BS7mXlAQeaSn8azw8OLxnwskFmG6vX2GTRluXclxc/edit?usp=sharing Show less



Blueprint Medicines

• United States
• Biotechnology Research
• 400 - 500 Employee

• Intern (Bioinformatics Engineer)

  • May 2022 - Aug 2022

  -Developed and maintained genomic data pipelines in DNAnexus using Python (Bioconductor)/Jupyter. -Implemented software engineering techniques to automate and optimize pipelines, resulting in increased efficiency. -Utilized software engineering skills to debug code and ensure accurate and reliable analysis of genomic data. -Presented research results at end of the Blueprint Summer Research Symposium} -Presented poster at end of the Blueprint Summer Research Symposium -Developed and maintained genomic data pipelines in DNAnexus using Python (Bioconductor)/Jupyter. -Implemented software engineering techniques to automate and optimize pipelines, resulting in increased efficiency. -Utilized software engineering skills to debug code and ensure accurate and reliable analysis of genomic data. -Presented research results at end of the Blueprint Summer Research Symposium} -Presented poster at end of the Blueprint Summer Research Symposium



American Institute of Mathematics

• United States
• Research Services
• 1 - 100 Employee

• Graduate Researcher

  • May 2020 - Aug 2020

  • Summer graduate research program centering COVID‑19 and applied mathematics. • Involved in the creation of a Independent research project around co‑morbidities and COVID‑19 • Used R Studio to analyze the data and use SIR mathematical Modeling Techniques • First to use COVID‑19 data from the Mexican Government (1TB) • Summer graduate research program centering COVID‑19 and applied mathematics. • Involved in the creation of a Independent research project around co‑morbidities and COVID‑19 • Used R Studio to analyze the data and use SIR mathematical Modeling Techniques • First to use COVID‑19 data from the Mexican Government (1TB)



The University of British Columbia

• Canada
• Higher Education
• 700 & Above Employee

• Research Intern, Centre for Applied Neurogenetics

  • May 2019 - Aug 2019

  • Developed Polygenetic risk scores from clinical data of patients with Alzheimer’s, Parkinson’s, and Dementia. • Cleaned and analyzed datasets with multiple statistical models. • Developed Polygenetic risk scores from clinical data of patients with Alzheimer’s, Parkinson’s, and Dementia. • Cleaned and analyzed datasets with multiple statistical models.



Howard Hughes Medical Institute

• United States
• Research Services
• 700 & Above Employee

• Research Intern

  • May 2018 - Aug 2018

  • Developed strain specific genotyping protocols through a process of gathering and developing specific primers. • Performed standard touchdown PCR, and sent PCR product to a third party sequencing service • Analyzed and developed probes • Developed strain specific genotyping protocols through a process of gathering and developing specific primers. • Performed standard touchdown PCR, and sent PCR product to a third party sequencing service • Analyzed and developed probes