SJ McGeady
Research Assistant, CIRCLE (Data Engineer) at Jonathan M. Tisch College of Civic Life- Claim this Profile
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Bio
Experience
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Jonathan M. Tisch College of Civic Life
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United States
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Higher Education
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1 - 100 Employee
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Research Assistant, CIRCLE (Data Engineer)
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Jan 2023 - Present
-Engineered a large data pipeline (1000+ lines of code) using SQL/MySQL and R. - Processed and analyzed large quantities of genomic data (TBs) from approximately 130 organizations using R Studio and Cloud infrastructure. -Developed data wrangling techniques and statistical analysis workflows to extract meaningful insights from the data. -Engineered a large data pipeline (1000+ lines of code) using SQL/MySQL and R. - Processed and analyzed large quantities of genomic data (TBs) from approximately 130 organizations using R Studio and Cloud infrastructure. -Developed data wrangling techniques and statistical analysis workflows to extract meaningful insights from the data.
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Tufts University
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United States
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Higher Education
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700 & Above Employee
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Research Assistant (Bioinformatics Engineer)
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May 2021 - Present
-Conducted genomic analysis of large-scale genetic data projects surrounding infectious disease and genetic analysis of viral interacting proteins. -Utilized Next Generation Sequencing (WES, WGS) for data analysis. -Developed algorithms in Python (Pandas, PyTorch, NumPy, BioCManager) and R (ggplot2, Shiny) for data analysis and statistical modeling. -Presented research results at American Society of Naturalists conference in January 2023 : https://docs.google.com/presentation/d/172BS7mXlAQeaSn8azw8OLxnwskFmG6vX2GTRluXclxc/edit?usp=sharing Show less
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Blueprint Medicines
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United States
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Biotechnology Research
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400 - 500 Employee
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Intern (Bioinformatics Engineer)
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May 2022 - Aug 2022
-Developed and maintained genomic data pipelines in DNAnexus using Python (Bioconductor)/Jupyter. -Implemented software engineering techniques to automate and optimize pipelines, resulting in increased efficiency. -Utilized software engineering skills to debug code and ensure accurate and reliable analysis of genomic data. -Presented research results at end of the Blueprint Summer Research Symposium} -Presented poster at end of the Blueprint Summer Research Symposium -Developed and maintained genomic data pipelines in DNAnexus using Python (Bioconductor)/Jupyter. -Implemented software engineering techniques to automate and optimize pipelines, resulting in increased efficiency. -Utilized software engineering skills to debug code and ensure accurate and reliable analysis of genomic data. -Presented research results at end of the Blueprint Summer Research Symposium} -Presented poster at end of the Blueprint Summer Research Symposium
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American Institute of Mathematics
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United States
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Research Services
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1 - 100 Employee
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Graduate Researcher
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May 2020 - Aug 2020
• Summer graduate research program centering COVID‑19 and applied mathematics. • Involved in the creation of a Independent research project around co‑morbidities and COVID‑19 • Used R Studio to analyze the data and use SIR mathematical Modeling Techniques • First to use COVID‑19 data from the Mexican Government (1TB) • Summer graduate research program centering COVID‑19 and applied mathematics. • Involved in the creation of a Independent research project around co‑morbidities and COVID‑19 • Used R Studio to analyze the data and use SIR mathematical Modeling Techniques • First to use COVID‑19 data from the Mexican Government (1TB)
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The University of British Columbia
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Canada
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Higher Education
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700 & Above Employee
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Research Intern, Centre for Applied Neurogenetics
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May 2019 - Aug 2019
• Developed Polygenetic risk scores from clinical data of patients with Alzheimer’s, Parkinson’s, and Dementia. • Cleaned and analyzed datasets with multiple statistical models. • Developed Polygenetic risk scores from clinical data of patients with Alzheimer’s, Parkinson’s, and Dementia. • Cleaned and analyzed datasets with multiple statistical models.
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Howard Hughes Medical Institute
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United States
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Research Services
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700 & Above Employee
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Research Intern
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May 2018 - Aug 2018
• Developed strain specific genotyping protocols through a process of gathering and developing specific primers. • Performed standard touchdown PCR, and sent PCR product to a third party sequencing service • Analyzed and developed probes • Developed strain specific genotyping protocols through a process of gathering and developing specific primers. • Performed standard touchdown PCR, and sent PCR product to a third party sequencing service • Analyzed and developed probes
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Education
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Georgetown University
Master of Science - MS, Bioinformatics -
William & Mary
Computational Applied Mathematics and Statistics, Computational Biology -
Dominion High School