Bioinformatician

• May 2020 - Present

Bioinformatician

• May 2020 - Present

Bioinformatician (Junior Application Specialist)

• Jun 2018 - Dec 2019

Bioinformatican in ELIXIR Finland senstive data analysis and transfer Project, responsible for building DNA and RNA data analysis pipelines, mining and interpretation of data processsing results, present research results to customer, project manager and director. Optimized, implemented and performance benchmarked variant calling workflow on cloud platform with container, documented pipelines and processes Wrote, test, implemented Python, R and WDL script of NGS data and (single cell) RNA-Seq analysis on cloud and local system Wrote blog, prepared tutorial materials and acted as help teacher in bioinformatics training courses

Research Assistant

• Feb 2018 - Apr 2018

Studying the communication of malignant glioma cells and searching the cell death signaling molecules with synthetic compounds. Performed cell culture, drug test and data analysis of cell image, apoptosis, reactive oxygen species Studying the communication of malignant glioma cells and searching the cell death signaling molecules with synthetic compounds. Performed cell culture, drug test and data analysis of cell image, apoptosis, reactive oxygen species

Demola Project (Model Dev)

• Aug 2017 - Dec 2017

Built model with MATLAB Simulink. Part of a multidisciplinary team whose task was to find a cost-effective method to detect/predict supercooled seawater and prevent it from becoming lethal for harvesting-sized rainbow trouts kept in aquaculture winter storage tanks. Built model with MATLAB Simulink. Part of a multidisciplinary team whose task was to find a cost-effective method to detect/predict supercooled seawater and prevent it from becoming lethal for harvesting-sized rainbow trouts kept in aquaculture winter storage tanks.

Research Assistant

• Oct 2011 - Jul 2013

Designed and generated a zebrafish transgenic line: Tg(hsp70:NICD), reported in my B.Eng. Thesis. Knocked out akt3 and ENSDARG00000079973 genes by CRISPR/Cas9 system in zebrafish. Combined Microinjection, FISH, subclone, ENU screen and Mapping to analysis key genes of vascular generation in zebrafish Designed and generated a zebrafish transgenic line: Tg(hsp70:NICD), reported in my B.Eng. Thesis. Knocked out akt3 and ENSDARG00000079973 genes by CRISPR/Cas9 system in zebrafish. Combined Microinjection, FISH, subclone, ENU screen and Mapping to analysis key genes of vascular generation in zebrafish

Research Assistant

• Feb 2009 - Feb 2011

Conducted statistical analysis of microarray data and used qRT-PCR to validate microarray results.Resulted in 1 publication in SCI Journal. Performed Gene cloning (PCR, RT-PCR) resulting in 1 conference paper. Performed DNA and RNA extraction from pig and E.coli. Conducted statistical analysis of microarray data and used qRT-PCR to validate microarray results.Resulted in 1 publication in SCI Journal. Performed Gene cloning (PCR, RT-PCR) resulting in 1 conference paper. Performed DNA and RNA extraction from pig and E.coli.