Shanshan He

Research Assistant at The Single-Cell Omics Platform (SCOP) at Novo Nordisk Foundation Center for Basic Metabolic Research
  • Claim this Profile
Contact Information
us****@****om
(386) 825-5501
Location
Copenhagen, Capital Region, Denmark, DK

Topline Score

Topline score feature will be out soon.

Bio

Generated by
Topline AI

You need to have a working account to view this content.
You need to have a working account to view this content.

Experience

    • Denmark
    • Research Services
    • 100 - 200 Employee
    • Research Assistant at The Single-Cell Omics Platform (SCOP)
      • Aug 2023 - Present

    • Master Thesis Student
      • Feb 2023 - Aug 2023

      • Integrating unpaired single-cell ATAC-seq and RNA-seq data from public dataset (Tabula Sapiens and CATLAS) with multiome data through Seurat v4 and latest deep learning methods • Optimizing and benchmarking these different methods• Down-stream analysis of transcriptional regulation, cell type markers and single-cell genetic enrichment

    • Project Student
      • Nov 2022 - Jan 2023

      • Clusteredandannotatedcelltypebasedonsingle-cell sequencing data(ATAC-seqandRNA-seq)through PCA, UMAP, SVD, and WNN methods• Establishedandcompareddifferentstatisticalmethods(shiftR, fGWAS, gChromVAR)for assessing single-cellGWAS enrichments based on 10x multiome data among different tissues, such as colon, liver, and muscle

    • China
    • Higher Education
    • 700 & Above Employee
    • Bachelor Thesis
      • Oct 2019 - May 2021

      • Demonstrated that de novo transcription is required for bacterial peptide flg22-induced stomatal immunity using pharmacological tools, transcriptional and translational inhibitors • Identified two plant hormone abscisic acid(ABA) receptors involved in flg22-mediated de novo transcription • Performed RNA-seq using Smart-seq2 to analyze genome-wide transcription in Arabidopsis stomatal guard cells protoplats in wild type and ABA receptor • Demonstrated that de novo transcription is required for bacterial peptide flg22-induced stomatal immunity using pharmacological tools, transcriptional and translational inhibitors • Identified two plant hormone abscisic acid(ABA) receptors involved in flg22-mediated de novo transcription • Performed RNA-seq using Smart-seq2 to analyze genome-wide transcription in Arabidopsis stomatal guard cells protoplats in wild type and ABA receptor

    • China
    • Investment Banking
    • 1 - 100 Employee
    • Assistant Investment Assistant
      • Jan 2021 - Mar 2021

      • Assistant Investment Assistant at Strategic Investment Department • Updated weekly report of Chinese pharmaceutical industry development including latest government policy, latest research progress, new drug application, pharma finance and investment news both China and international markets • Completed three independent analysis reports of antibody therapy, cell therapy and RNA interference therapy through analyzing their principles, development, market size, current products and competitors Show less

    • China
    • Higher Education
    • 300 - 400 Employee
    • Summer Intern
      • Jul 2020 - Aug 2020

      • Hypothesized that the H2A.Z isoform gene H2AFV may be important to chromosome alignment through observing mitosis of H2A.Z RNAi knockdown in Hela cell line and generated siRNA-resistant stable cell line by constructing plasmid through molecular cloning • Detected off-target effects of RNAi by analyzing H2A.Z expression through western blotting • Hypothesized that the H2A.Z isoform gene H2AFV may be important to chromosome alignment through observing mitosis of H2A.Z RNAi knockdown in Hela cell line and generated siRNA-resistant stable cell line by constructing plasmid through molecular cloning • Detected off-target effects of RNAi by analyzing H2A.Z expression through western blotting

Education

  • Københavns Universitet - University of Copenhagen
    Master of Science - MS, Bioinformatics
    2021 - 2023
  • Shanghai Jiao Tong University
    Bachelor's degree, Plant Science and Technology
    2017 - 2021

Community

You need to have a working account to view this content. Click here to join now