Shanshan He
Research Assistant at The Single-Cell Omics Platform (SCOP) at Novo Nordisk Foundation Center for Basic Metabolic Research- Claim this Profile
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Bio
Experience
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Novo Nordisk Foundation Center for Basic Metabolic Research
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Denmark
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Research Services
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100 - 200 Employee
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Research Assistant at The Single-Cell Omics Platform (SCOP)
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Aug 2023 - Present
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Master Thesis Student
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Feb 2023 - Aug 2023
• Integrating unpaired single-cell ATAC-seq and RNA-seq data from public dataset (Tabula Sapiens and CATLAS) with multiome data through Seurat v4 and latest deep learning methods • Optimizing and benchmarking these different methods• Down-stream analysis of transcriptional regulation, cell type markers and single-cell genetic enrichment
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Project Student
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Nov 2022 - Jan 2023
• Clusteredandannotatedcelltypebasedonsingle-cell sequencing data(ATAC-seqandRNA-seq)through PCA, UMAP, SVD, and WNN methods• Establishedandcompareddifferentstatisticalmethods(shiftR, fGWAS, gChromVAR)for assessing single-cellGWAS enrichments based on 10x multiome data among different tissues, such as colon, liver, and muscle
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Shanghai Jiao Tong University
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China
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Higher Education
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700 & Above Employee
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Bachelor Thesis
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Oct 2019 - May 2021
• Demonstrated that de novo transcription is required for bacterial peptide flg22-induced stomatal immunity using pharmacological tools, transcriptional and translational inhibitors • Identified two plant hormone abscisic acid(ABA) receptors involved in flg22-mediated de novo transcription • Performed RNA-seq using Smart-seq2 to analyze genome-wide transcription in Arabidopsis stomatal guard cells protoplats in wild type and ABA receptor • Demonstrated that de novo transcription is required for bacterial peptide flg22-induced stomatal immunity using pharmacological tools, transcriptional and translational inhibitors • Identified two plant hormone abscisic acid(ABA) receptors involved in flg22-mediated de novo transcription • Performed RNA-seq using Smart-seq2 to analyze genome-wide transcription in Arabidopsis stomatal guard cells protoplats in wild type and ABA receptor
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Minsheng Securities Co.,Ltd.
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China
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Investment Banking
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1 - 100 Employee
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Assistant Investment Assistant
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Jan 2021 - Mar 2021
• Assistant Investment Assistant at Strategic Investment Department • Updated weekly report of Chinese pharmaceutical industry development including latest government policy, latest research progress, new drug application, pharma finance and investment news both China and international markets • Completed three independent analysis reports of antibody therapy, cell therapy and RNA interference therapy through analyzing their principles, development, market size, current products and competitors Show less
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NYU Shanghai
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China
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Higher Education
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300 - 400 Employee
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Summer Intern
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Jul 2020 - Aug 2020
• Hypothesized that the H2A.Z isoform gene H2AFV may be important to chromosome alignment through observing mitosis of H2A.Z RNAi knockdown in Hela cell line and generated siRNA-resistant stable cell line by constructing plasmid through molecular cloning • Detected off-target effects of RNAi by analyzing H2A.Z expression through western blotting • Hypothesized that the H2A.Z isoform gene H2AFV may be important to chromosome alignment through observing mitosis of H2A.Z RNAi knockdown in Hela cell line and generated siRNA-resistant stable cell line by constructing plasmid through molecular cloning • Detected off-target effects of RNAi by analyzing H2A.Z expression through western blotting
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Education
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Københavns Universitet - University of Copenhagen
Master of Science - MS, Bioinformatics -
Shanghai Jiao Tong University
Bachelor's degree, Plant Science and Technology