Sean Black
Data Scientist at ATOM Accelerating Therapeutics for Opportunities in Medicine- Claim this Profile
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Bio
Experience
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ATOM Accelerating Therapeutics for Opportunities in Medicine
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United States
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Biotechnology Research
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1 - 100 Employee
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Data Scientist
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Nov 2021 - Present
- Utilized large scale molecular databases to collect, curate, and manipulate data for input to machine learning and other artificial intelligence-based model training using several tools including ATOM Modeling Pipeline (AMPL) - Led research project to train a machine learning model to predict binding free energy of molecule-protein poses to reduce need for computationally expensive simulations. - Deployed packages to various cloud computing and HPC systems including Google Cloud, Microsoft Azure, and others. - Designed and implemented modular software packages based on evolutionary and swarm-based algorithms to create new molecules with optimized properties for drug discovery. - Collaborated with customers to assist in installation, testing, and training on AMPL. Used information learned from these clients to improve AMPL’s machine learning algorithms and user experience. - Mentored students in Drug Discovery related projects with scope of machine learning in bioinformatics. Show less
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The Johns Hopkins University Applied Physics Laboratory
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United States
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Defense and Space Manufacturing
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700 & Above Employee
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Systems Engineer
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Jun 2018 - Nov 2021
-Integrated and utilized an adaptive sampling program in Python and MATLAB to provide the government with a tool to validate their threat models more efficiently. -Utilized the adaptive sampling tool to test a simulation and search for potential bugs in the software. -Developed MATLAB scripts to develop tools that assist in the analysis of test data that verifies combat system performance. -Analyzed results and investigated anomalies from 3 test events to verify combat system performance requirements for the US Navy’s Zumwalt class destroyers. -Spearheaded the Model-Based Systems Engineering (MBSE) model development of a threat model while developing an MBSE approach and educating the government sponsor on MagicDraw to expedite future model development with lower overhead cost and more flexibility. -Led multiple major change packages in MagicDraw to aid in the delivery of an MBSE model for a new EO/IR sensor suite for the US Navy. Show less
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Naval Surface Warfare Center Carderock Division (NSWCCD)
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United States
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Armed Forces
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500 - 600 Employee
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Engineering Intern
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Jun 2014 - Aug 2017
- Assisted with the testing and implementation of multiple STEM outreach programs. - Performed an investigation into the strengths and weaknesses of four hydrodynamic resistance prediction programs that were then used to evaluate a new hull optimization software called SimDShip. - Prepared, mounted, imaged, and characterized metal and plastic samples produced by additive manufacturing techniques. - Troubleshooted, repaired, and utilized a hobyist level desktop 3D printer to manufacture the rudder assembly to a naval ship. Wrote an article based on this task that was published in the Naval Engineers Journal (“Limitations of a Hobbyist Level 3D Printer,” Naval Engineers Journal) Show less
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Education
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The Johns Hopkins University
Artificial Intelligence, Artificial Intelligence -
Frostburg State University
Engineering and Physics, Minor in Math