Saim Momin

at Max Planck Institute of Immunobiology and Epigenetics
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Location
Freiburg, Baden-Württemberg, Germany, DE

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Experience

    • Germany
    • Research Services
    • 1 - 100 Employee
      • Mar 2023 - Present

      • Mar 2023 - Present

    • Germany
    • Higher Education
    • 700 & Above Employee
    • Research Assistant at Algorithmic Bioinformatics Group headed by Prof. Dr. Sven Rahmann
      • Mar 2022 - Feb 2023

      1. Development of Bioconda package distributions for bioinformatic tools and algorithms. 2. Development of Snakemake pipeline for bioinformatic applications. 3. Benchmarking of preexisting and in-development Snakemake pipelines, Metagenomics and Metatranscriptomics tools for performance evaluation. 1. Development of Bioconda package distributions for bioinformatic tools and algorithms. 2. Development of Snakemake pipeline for bioinformatic applications. 3. Benchmarking of preexisting and in-development Snakemake pipelines, Metagenomics and Metatranscriptomics tools for performance evaluation.

    • Germany
    • Biotechnology Research
    • 200 - 300 Employee
      • Aug 2020 - Jul 2021

      1. Development of Sequencing based NGS pipelines for Bacterial Characterization consisting of several modules such as SNP Detection, Antimicrobial Resistance Genes Detection, Serotyping, Straintyping, Bacterial Virulence Gene Detection, Plasmid Detection)2. Routine bioinformatic analysis according to project requirements.3. Development and integration of API’s for custom Bio-IT Project.4. Development of custom Python scripts as a part of project requirement. 5. Benchmarking of different Bioinformatics tools and algorithms as a part of R&D.6. Support team with troubleshooting and assistance related to development items. 7. Documentation of all development items for efficient knowledge transfer. Show less

      • Aug 2019 - Aug 2020

      1. Development of a sequencing based pathogen monitoring pipeline for routine bioinformatics analysis.2. Integration of the pipeline with Interactive RShiny Dashboard for real time statistics from NCBI database.

    • Education Administration Programs
    • 1 - 100 Employee
    • Machine Learning Lead
      • Feb 2020 - Aug 2020

      National finalist for Smart India Hackathon 2020, for the problem statement issued Ministry of Micro, Small and Medium Enterprises. 1. Developed an image classifier model for detection of single use plastics with Neural Networks Architecture. (Keras, Tensorflow) 2. Integrated and hosted the model with a B2B website as PaaS framework. 3. Responsible for developing a business model for collection and utilisation of single use plastics and various other industrial wastes. National finalist for Smart India Hackathon 2020, for the problem statement issued Ministry of Micro, Small and Medium Enterprises. 1. Developed an image classifier model for detection of single use plastics with Neural Networks Architecture. (Keras, Tensorflow) 2. Integrated and hosted the model with a B2B website as PaaS framework. 3. Responsible for developing a business model for collection and utilisation of single use plastics and various other industrial wastes.

    • United States
    • Software Development
    • 200 - 300 Employee
    • Virtual Intern : Asia Virtual Experience Program
      • Jul 2020 - Jul 2020

      Self paced internship program focused on: 1. Exposure to Business Foundation Skills 2. SMART Goal Setting 3. Know How of Microsoft's Values and Work culture. 4. Confidence Building Skills 5. Technical skills related to Microsoft Azure solutions. Self paced internship program focused on: 1. Exposure to Business Foundation Skills 2. SMART Goal Setting 3. Know How of Microsoft's Values and Work culture. 4. Confidence Building Skills 5. Technical skills related to Microsoft Azure solutions.

    • United States
    • Biotechnology
    • Project Team Lead
      • Nov 2019 - Jul 2020

      1. Performed comparative studies and estimated toxicity endpoints from EPA database. 2. Collection of toxicity endpoints for predictive modelling. 3. Responsible for leading a team of 4 members for project management and in-time solution delivery. 4. Providing support and feedback to team on their respective queries and blockades. 1. Performed comparative studies and estimated toxicity endpoints from EPA database. 2. Collection of toxicity endpoints for predictive modelling. 3. Responsible for leading a team of 4 members for project management and in-time solution delivery. 4. Providing support and feedback to team on their respective queries and blockades.

    • United States
    • Financial Services
    • 700 & Above Employee
    • Virtual Intern : Software Engineering
      • Jun 2020 - Jun 2020

      Self paced internship program focused on: 1. Exposure to Stock Price data feed and analysis using Python. 2. Know How about JPMorgan Chase frameworks and tools. 3. Interactive Trader's dashboard using Perspective - Interactive visualization tool for large, real-time dataset developed by JPMorgan Self paced internship program focused on: 1. Exposure to Stock Price data feed and analysis using Python. 2. Know How about JPMorgan Chase frameworks and tools. 3. Interactive Trader's dashboard using Perspective - Interactive visualization tool for large, real-time dataset developed by JPMorgan

    • India
    • IT Services and IT Consulting
    • 1 - 100 Employee
    • Software Development Intern
      • Jun 2019 - Aug 2019

      1. Development of analytics dashboards for custom projects. 2. Implemented a machine learning based solution for an industrial client. 3. Developed and maintained Software Design Documentation for projects. 4. Contributed towards hosting of software solutions using AWS Cloud. 1. Development of analytics dashboards for custom projects. 2. Implemented a machine learning based solution for an industrial client. 3. Developed and maintained Software Design Documentation for projects. 4. Contributed towards hosting of software solutions using AWS Cloud.

    • India
    • Professional Training and Coaching
    • 1 - 100 Employee
    • Data Science Intern
      • Mar 2019 - Apr 2019

      1. Contributed to analysis of data using various Python packages (NumPy, Pandas, SciPy, Matplotlib, Seaborn, Scikit-Learn) for information mining and visualization. 2. Implementation with various machine learning classification and regression algorithms. 3. Introduction to Deep Learning frameworks. (ANN, TensorFlow, Keras, LSTM, NLP applications) 1. Contributed to analysis of data using various Python packages (NumPy, Pandas, SciPy, Matplotlib, Seaborn, Scikit-Learn) for information mining and visualization. 2. Implementation with various machine learning classification and regression algorithms. 3. Introduction to Deep Learning frameworks. (ANN, TensorFlow, Keras, LSTM, NLP applications)

    • India
    • IT Services and IT Consulting
    • 700 & Above Employee
    • Project Contributor
      • Dec 2018 - Dec 2018

      1. Responsible for evaluation of Project MANAV - A Human Atlas initiative by Department of Biotechnology (DBT), India 2. Performed testing and evaluation of annotation service for accurate and scientific information retrieval. 1. Responsible for evaluation of Project MANAV - A Human Atlas initiative by Department of Biotechnology (DBT), India 2. Performed testing and evaluation of annotation service for accurate and scientific information retrieval.

    • India
    • Biotechnology Research
    • 1 - 100 Employee
    • Summer Intern
      • Jun 2018 - Jun 2018

      1. Introduction to various Next Generation Sequencing data analysis methodologies, tools and frameworks. 2. Performed RNA-Seq Differential Gene Expression Profiling for Bos Taurus genome. 3. Implemented R and Python packages to analyse and interpret the results obtained from RNA-Seq. 1. Introduction to various Next Generation Sequencing data analysis methodologies, tools and frameworks. 2. Performed RNA-Seq Differential Gene Expression Profiling for Bos Taurus genome. 3. Implemented R and Python packages to analyse and interpret the results obtained from RNA-Seq.

Education

  • Universität des Saarlandes
    Master of Science - MS, Bioinformatics
    2021 -
  • MIT School of Bioengineering Sciences and Research
    Master's degree, Bioengineering, Majors in Bioinformatics
    2017 - 2021

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