Olivier Naret

Bioinformatician Lead at SUN bioscience
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CH

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Experience

    • Switzerland
    • Biotechnology Research
    • 1 - 100 Employee
    • Bioinformatician Lead
      • Jan 2022 - Present
    • Switzerland
    • Higher Education
    • 700 & Above Employee
    • Postdoctoral Researcher
      • Mar 2021 - Jan 2022

      Develops "Polyscore Genetics," a startup project to implement genetic medicine into routine clinical care.

    • PHD Student
      • Feb 2017 - Mar 2021

      Thesis: "The genetic architecture of complex human traits and the dawn of genomic medicine"* Developed a phenotype prediction method using artificial neural networks structurally based on Topologically Associated Domains}* Developed a method to include genetic ancestry along polygenic score in the clinical risk score}* Implemented an online competition on the `CrowdAI' platform in collaboration with `OpenSNP' to produce genomic predictions* Supervised student projects in the lab, teaching 'Probability and Statistics I and II', 'Genetics and Genomics', and 'Genomics and Bioinformatics' at the university* Awarded presentations at prestigious conferences, including the European Society of Human Genetics and Applied Machine Learning Days* Awarded an SNSF Doc.Mobility grant to work in the lab of Prof. Jonathan K. Pritchard at Stanford on a hypothesis to explain the mechanics of the omnigenic architecture of complex phenotypes* Taught courses of 'Genomics and bioinformatics', 'Genetics and genomics', 'Probability and Statistics I and II'

    • Research Assistant
      • Jan 2016 - Feb 2017

      * Developed an R framework to simulate genome-to-genome studies (G2G)* Defined the good practices to perform a G2G analysis when it has stratified populations in hosts and pathogens

    • Hospitals and Health Care
    • 1 - 100 Employee
    • Visiting Student Researcher
      • Jul 2019 - Dec 2019

      * Awarded an SNSF Doc.Mobility grant to travel to Stanford and collaborate with Prof. Jonathan K. Pritchard * Tested whether competition mechanism for cellular resources explains the omnigenic architecture of some complex phenotypes through mathematical modeling * Awarded an SNSF Doc.Mobility grant to travel to Stanford and collaborate with Prof. Jonathan K. Pritchard * Tested whether competition mechanism for cellular resources explains the omnigenic architecture of some complex phenotypes through mathematical modeling

    • France
    • Software Development
    • 1 - 100 Employee
    • Software Engineer
      • Jan 2014 - Sep 2015

      * Designed and developed a test automation tool with a server side (Java, Maven) and a web client side (HTML/CSS, PHP, AJAX, Javascript (JQuery)), based on a PostgreSQL database and integrated it into the continuous integration chain (Jenkins) of an Axway product * Developed an interface for JBehave and disseminated the associated Behavior Driven Development best practices to QA engineers from various teams * Designed and developed a test automation tool with a server side (Java, Maven) and a web client side (HTML/CSS, PHP, AJAX, Javascript (JQuery)), based on a PostgreSQL database and integrated it into the continuous integration chain (Jenkins) of an Axway product * Developed an interface for JBehave and disseminated the associated Behavior Driven Development best practices to QA engineers from various teams

Education

  • EPFL (École polytechnique fédérale de Lausanne)
    Doctor of Philosophy - PhD
    2017 - 2021
  • Université Grenoble Alpes
    Master's degree, Computer Science
    2013 - 2014
  • Pierre and Marie Curie University
    Bachelor's degree, Biology, General
    2009 - 2012

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