Experience

Academy of Sciences of the Czech Republic

• Czechia
• Research Services
• 200 - 300 Employee

• Postdoctoral Researcher

  • Sep 2019 - Present

  Conducting computational research in the Structural Bioinformatics of Proteins group. Currently focused on improving refinement of DNA/RNA structures using DNATCO(https://www.dnatco.org) conformers as well as continuing development of the ProSHADE library. Also started working on software for water molecules position prediction in atomic models and density maps. Conducting computational research in the Structural Bioinformatics of Proteins group. Currently focused on improving refinement of DNA/RNA structures using DNATCO(https://www.dnatco.org) conformers as well as continuing development of the ProSHADE library. Also started working on software for water molecules position prediction in atomic models and density maps.



MRC Laboratory of Molecular Biology (LMB)

• United Kingdom
• Research Services
• 200 - 300 Employee

• Scientific Researcher

  • Apr 2018 - Jan 2019

  Undertaking computational research aimed at EMDB data and identification of libraries of small fragments and their classification. Developing the ProSHADE library (http://fg.oisin.rc-harwell.ac.uk/projects/proshade/) computational tool for shape similarity description, symmetry detection and general density map manipulation. Undertaking computational research aimed at EMDB data and identification of libraries of small fragments and their classification. Developing the ProSHADE library (http://fg.oisin.rc-harwell.ac.uk/projects/proshade/) computational tool for shape similarity description, symmetry detection and general density map manipulation.



University of Cambridge

• United Kingdom
• Research Services
• 700 & Above Employee

• Part IIA Bioinformatics Course Supervisor

  • Jan 2018 - Mar 2018

  Supervising students (i.e. tutoring) of the Part IIA Bioinformatics course (Department of Genetics). This included leading discussion about the lectures, explaining anything the students may not have understood, preparing and marking assignments and advising students on the course and field in general. Supervising students (i.e. tutoring) of the Part IIA Bioinformatics course (Department of Genetics). This included leading discussion about the lectures, explaining anything the students may not have understood, preparing and marking assignments and advising students on the course and field in general.



University of Cambridge

• United Kingdom
• Research Services
• 700 & Above Employee

• Part IIA Bioinformatics Course Supervisor

  • Jan 2017 - Mar 2017

  Supervising students (i.e. tutoring) of the Part IIA Bioinformatics course (Department of Genetics). This included leading discussion about the lectures, explaining anything the students may not have understood, preparing and marking assignments and advising students on the course and field in general. Supervising students (i.e. tutoring) of the Part IIA Bioinformatics course (Department of Genetics). This included leading discussion about the lectures, explaining anything the students may not have understood, preparing and marking assignments and advising students on the course and field in general.



University of Cambridge

• United Kingdom
• Research Services
• 700 & Above Employee

• Part IIA Bioinformatics Course Supervisor

  • Jan 2016 - May 2016

  Supervising students (i.e. tutoring) of the Part IIA Bioinformatics course (Department of Genetics). This included leading discussion about the lectures, explaining anything the students may not have understood, preparing and marking assignments and advising students on the course and field in general. Supervising students (i.e. tutoring) of the Part IIA Bioinformatics course (Department of Genetics). This included leading discussion about the lectures, explaining anything the students may not have understood, preparing and marking assignments and advising students on the course and field in general.



MRC Laboratory of Molecular Biology (LMB)

• United Kingdom
• Research Services
• 200 - 300 Employee

• MPhil Internship

  • May 2014 - Aug 2014

  Analysis of short polypeptide and DNA/RNA fragments (k-mers) available inthe PDB database using distance matrices; classication into 'structural alpha-bet' and it organisation into machine-readable format. Analysis of short polypeptide and DNA/RNA fragments (k-mers) available inthe PDB database using distance matrices; classication into 'structural alpha-bet' and it organisation into machine-readable format.



Lonza

• Switzerland
• Pharmaceutical Manufacturing
• 700 & Above Employee

• BSc Industrial Placement

  • Jun 2011 - May 2012

  Developed Perl scripts to annotate in-house genome sequences using a comparative genomics approach, piloted integration of diversed genome data using the InterMine software and helped with developing new version of Epibase(TM) product. Developed Perl scripts to annotate in-house genome sequences using a comparative genomics approach, piloted integration of diversed genome data using the InterMine software and helped with developing new version of Epibase(TM) product.