Experience

AMKbiotech

• France
• Biotechnology Research
• 1 - 100 Employee

• Data Scientist

  • Mar 2023 - Present

  * Image analysis - Deep learning (semantic and instance segmentation) - Machine learning (unsupervised clustering) - Statistics - Graphical visualization * Setting up analysis workflow * GUI development * Drafting deliverables * Supervision of intern (Master) * Image analysis - Deep learning (semantic and instance segmentation) - Machine learning (unsupervised clustering) - Statistics - Graphical visualization * Setting up analysis workflow * GUI development * Drafting deliverables * Supervision of intern (Master)



Max Planck Institute

• Research Services
• 200 - 300 Employee

• Data scientist

  • Sep 2020 - Sep 2022

  * Development of a method to measure the elasticity of biological membranes and to follow the conformational changes of proteins sensitive to membrane curvature by molecular dynamics simulations (Gromacs) * Data analysis - Machine Learning (Numpy, Pandas, Scipy, statsmodels, Scikit-Learn) - Membrane physics, derivatives, - regression - PCA - Clustering of protein conformations by hierarchical clustering * Visualization of results (matplotlib, Seaborn) * Project management * Writing protocols and a scientific article in English * Supervision of a bachelor intern for 6 months Show less



IPMC CNRS-U. NICE SOPHIA

• Data analyst

  • Jan 2020 - Sep 2020

  Development of the Potential mean force measurement protocol within the laboratory to evaluate how the energy of a system evolves as a function of the distance between two residues.

• Data analyst

  • Oct 2016 - Dec 2019

  PhD: Bioinformatic study of membranes containing different polyunsaturated phospholipids* Molecular dynamics simulation of biological membrane with various compositions (Gromacs)* Data analysis by developing new innovative descriptors (Numpy, Pandas, MDAnalysis), statistics (Scipy, statistics, R)* Visualization of results (matplotlib, Seaborn, ggplot (R))* Project management * Communication in French and English: Vulgarization - 4 scientific conferences (1 Best Poster Award) * Teaching in Bachelor degree of Biology and Computational Science: - Course and exam design - Supervision of student projects - Evaluation of exams, project reports and oral presentations* Writing in French and English: Scientific articles, funding applications, PhD thesis Show less



IGBMC

• Research Services
• 200 - 300 Employee

• Internship: Data Engineer

  • Jan 2016 - May 2016

  Analysis of dimerization interface of protein: - Molecular dynamics simulations to sample conformations (NAMD) - Updated the tool ( in collaboration with Dr. Cedric Grauffrel) to determine the hot spots of dimerization using the MM/PBSA method Analysis of dimerization interface of protein: - Molecular dynamics simulations to sample conformations (NAMD) - Updated the tool ( in collaboration with Dr. Cedric Grauffrel) to determine the hot spots of dimerization using the MM/PBSA method

• Internship: Data analyst

  • Nov 2015 - Nov 2015

  * Analysis / Comparison of the estrogen receptor ligand binding domain structures * Clustering of structures * Choice of reference structures * Analysis / Comparison of the estrogen receptor ligand binding domain structures * Clustering of structures * Choice of reference structures

• Internship : Data analyst

  • Feb 2015 - Jun 2015

  * Design and development of a tool to track the evolution of packing defects (Numpy) into biological membrane, taking into account - the movements of the membrane - the shape and size of packing defects which changes - fission and fusion of packing defects * Design and development of a tool to track the evolution of packing defects (Numpy) into biological membrane, taking into account - the movements of the membrane - the shape and size of packing defects which changes - fission and fusion of packing defects



CEA - Commissariat à l'énergie atomique et aux énergies alternatives

• Internship : Développeur

  • Jun 2014 - Jul 2014

  * Image processing (Scikit-image) * Development of tool with Graphical user interface (Tkinter) * Image processing (Scikit-image) * Development of tool with Graphical user interface (Tkinter)