Jerome Avondo
VP of Clinical Research & Reimbursement at Aidoc- Claim this Profile
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Bio
enrico coen
Jerome is an outstanding and collegiate computational scientist versed in image processing and data analysis. I am a biologist and have worked together with computer scientist Prof Andrew Bangham for many years on imaging and modelling plant growth. Jerome joined our group as a PhD student and then post doc, developing imaging tools to assist with automated segmentation and extraction of metrics from 3D microscopy images. He developed an imaging platform, VolViewer, that has proved invaluable to us and has also been used as software for a commercially distributed 3D imaging system known as Optical Projection Tomography. This work led to an excellent publication in the top plant journal, Plant Cell, and has been widely cited. He also introduced the OMERO imaging platform to our lab and organised a workshop, called OMERO in Action, which involved one day of talks followed by some practical sessions designed by Jerome. The workshop was a resounding success and is a testament to Jerome’s computational, organisational and communication skills.
Stephen Rawsthorne
Jerome worked for me in a team to implement an OMERO-based biological image management system at the John Innes Centre. The project was funded by JISC and comprised workflow analysis by Jerome of both lab- (including between firewalled collaborative organisations) and technology platform-based operations. His analysis and then provision of servers (working with our Computing Team) and tools has led to hugely positive developments. Workflow efficiences and data handling and tracking have improved, new servers have been implemented and new groups across the Norwich Research Park are implementing OMERO. The latter was in part a consequence of the OMERO workshop that Jerome organised and led at the JIC in which 24 particpants were fully immersed into OMERO. The training notes are available as a web resource under the DMBI project from JISC. Jerome is an outstanding innovator with an excellent grasp of the interface between the lab and the IT world.
enrico coen
Jerome is an outstanding and collegiate computational scientist versed in image processing and data analysis. I am a biologist and have worked together with computer scientist Prof Andrew Bangham for many years on imaging and modelling plant growth. Jerome joined our group as a PhD student and then post doc, developing imaging tools to assist with automated segmentation and extraction of metrics from 3D microscopy images. He developed an imaging platform, VolViewer, that has proved invaluable to us and has also been used as software for a commercially distributed 3D imaging system known as Optical Projection Tomography. This work led to an excellent publication in the top plant journal, Plant Cell, and has been widely cited. He also introduced the OMERO imaging platform to our lab and organised a workshop, called OMERO in Action, which involved one day of talks followed by some practical sessions designed by Jerome. The workshop was a resounding success and is a testament to Jerome’s computational, organisational and communication skills.
Stephen Rawsthorne
Jerome worked for me in a team to implement an OMERO-based biological image management system at the John Innes Centre. The project was funded by JISC and comprised workflow analysis by Jerome of both lab- (including between firewalled collaborative organisations) and technology platform-based operations. His analysis and then provision of servers (working with our Computing Team) and tools has led to hugely positive developments. Workflow efficiences and data handling and tracking have improved, new servers have been implemented and new groups across the Norwich Research Park are implementing OMERO. The latter was in part a consequence of the OMERO workshop that Jerome organised and led at the JIC in which 24 particpants were fully immersed into OMERO. The training notes are available as a web resource under the DMBI project from JISC. Jerome is an outstanding innovator with an excellent grasp of the interface between the lab and the IT world.
enrico coen
Jerome is an outstanding and collegiate computational scientist versed in image processing and data analysis. I am a biologist and have worked together with computer scientist Prof Andrew Bangham for many years on imaging and modelling plant growth. Jerome joined our group as a PhD student and then post doc, developing imaging tools to assist with automated segmentation and extraction of metrics from 3D microscopy images. He developed an imaging platform, VolViewer, that has proved invaluable to us and has also been used as software for a commercially distributed 3D imaging system known as Optical Projection Tomography. This work led to an excellent publication in the top plant journal, Plant Cell, and has been widely cited. He also introduced the OMERO imaging platform to our lab and organised a workshop, called OMERO in Action, which involved one day of talks followed by some practical sessions designed by Jerome. The workshop was a resounding success and is a testament to Jerome’s computational, organisational and communication skills.
Stephen Rawsthorne
Jerome worked for me in a team to implement an OMERO-based biological image management system at the John Innes Centre. The project was funded by JISC and comprised workflow analysis by Jerome of both lab- (including between firewalled collaborative organisations) and technology platform-based operations. His analysis and then provision of servers (working with our Computing Team) and tools has led to hugely positive developments. Workflow efficiences and data handling and tracking have improved, new servers have been implemented and new groups across the Norwich Research Park are implementing OMERO. The latter was in part a consequence of the OMERO workshop that Jerome organised and led at the JIC in which 24 particpants were fully immersed into OMERO. The training notes are available as a web resource under the DMBI project from JISC. Jerome is an outstanding innovator with an excellent grasp of the interface between the lab and the IT world.
enrico coen
Jerome is an outstanding and collegiate computational scientist versed in image processing and data analysis. I am a biologist and have worked together with computer scientist Prof Andrew Bangham for many years on imaging and modelling plant growth. Jerome joined our group as a PhD student and then post doc, developing imaging tools to assist with automated segmentation and extraction of metrics from 3D microscopy images. He developed an imaging platform, VolViewer, that has proved invaluable to us and has also been used as software for a commercially distributed 3D imaging system known as Optical Projection Tomography. This work led to an excellent publication in the top plant journal, Plant Cell, and has been widely cited. He also introduced the OMERO imaging platform to our lab and organised a workshop, called OMERO in Action, which involved one day of talks followed by some practical sessions designed by Jerome. The workshop was a resounding success and is a testament to Jerome’s computational, organisational and communication skills.
Stephen Rawsthorne
Jerome worked for me in a team to implement an OMERO-based biological image management system at the John Innes Centre. The project was funded by JISC and comprised workflow analysis by Jerome of both lab- (including between firewalled collaborative organisations) and technology platform-based operations. His analysis and then provision of servers (working with our Computing Team) and tools has led to hugely positive developments. Workflow efficiences and data handling and tracking have improved, new servers have been implemented and new groups across the Norwich Research Park are implementing OMERO. The latter was in part a consequence of the OMERO workshop that Jerome organised and led at the JIC in which 24 particpants were fully immersed into OMERO. The training notes are available as a web resource under the DMBI project from JISC. Jerome is an outstanding innovator with an excellent grasp of the interface between the lab and the IT world.
Experience
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Aidoc
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France
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Civic and Social Organizations
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VP of Clinical Research & Reimbursement
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Jul 2022 - Present
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Head of Clinical Research & Reimbursement
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Jun 2021 - Jun 2022
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Customer Success Manager
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Nov 2019 - Jun 2021
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Arterys
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United States
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Hospitals and Health Care
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1 - 100 Employee
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Senior Clinical Research Associate
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Nov 2018 - Nov 2019
I was part of the product leadership team and managed all activities surrounding clinical science for product evidence. This involved creating and running clinical assessments for regulatory, creating and managing research relationships with customers and making sure we published and promoted our products with scientific rigor. My work involved working directly with machine learning scientists, software developers, product managers and regulatory. I was part of the product leadership team and managed all activities surrounding clinical science for product evidence. This involved creating and running clinical assessments for regulatory, creating and managing research relationships with customers and making sure we published and promoted our products with scientific rigor. My work involved working directly with machine learning scientists, software developers, product managers and regulatory.
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Hermes Medical Solutions
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Sweden
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Medical Equipment Manufacturing
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1 - 100 Employee
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Senior Software Developer
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Apr 2012 - Nov 2018
Development of visualisation and quantification software for medical imaging. Use of ITK, VTK and MITK for software development. Support for PET, SPECT, MRI and CT imaging modalities. I designed and implemented the:• HERMES Hybrid3D Lung Lobe Quantification module• HERMES Hybrid3D Selective Internal Radiation Therapy moduleI also co-developed the:• HERMES Hybrid3D Viewer• HERMES Hybrid3D Tumor Finder moduleOther activities included:• Sales support with web and on-site presentations and demonstrations• Scientific conferences and trade shows• Internal training meetings, documents and videos Show less
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Clinical Science Manager
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Apr 2012 - Nov 2018
Provided project management, scientific support, software development and operational assistance for research projects aligned with the company’s business strategy. I helped reinforce relevant collaborations with external partners to expand, improve or reinvent our product portfolio.My roles included:• Research projects at partner centers.• Scientific, programming and operational support for partner sites .• Working with partner sites and multi-disciplinary teams to produce product design specifications. • Built prototype applications to support research projects.• Assisted software development management of the research project from concept to release.• Assisted partner sites with relevant publications, presentations and grants.• Prepared promotional material and took part in company promotional activities.• Attended scientific conferences and trade-shows.• Helped identify future research projects in line with company business strategy. • Developed business cases for proposed research projects for presentation to the management group.• Looked for opportunities for the company to generate its own intellectual property. Show less
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John Innes Centre
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United Kingdom
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Research Services
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200 - 300 Employee
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Post-doctoral Scientist
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Apr 2011 - Apr 2012
Development of visualisation, quantification and data management tools for multi-dimensional biological images. Extended viewing, quantification and processing capabilities of VolViewer (www.volviewer.org) using OpenGL and OpenCL. Deployed and trained new users in the use of the Open Microscopy Environment for data management of biological images in the lab.
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Developer & Analyst
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Apr 2010 - Apr 2011
Data Management for Bio-Imaging. The customization and rollout of a data management, processing and visualisation institute wide service for the bio-imaging department at the John Innes Centre (www.jic.ac.uk). This involved deploying the Open Microscopy Environment (www.openmicroscopy.org), writing image-processing pipelines for server/cluster execution, deploying Mediawiki for the whole institute and making VolViewer (www.volviewer.org), a volume rendering framework, compatible for client-side and server-side GPU volume rendering.An international meeting was also chaired and organized (http://dmbi.nbi.bbsrc.ac.uk/index.php/OMERO) to bring together the community and train users in the use of the Open Microscopy Environment (www.openmicroscopy.org). Show less
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University of East Anglia
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United Kingdom
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Higher Education
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700 & Above Employee
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Research Associate
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Aug 2007 - Apr 2010
Development of visualization, quantification and data management tools for confocal microscopy and optical projection tomography images. Created the VolViewer (www.volviewer.org) volume rendering framework for use in the lab. The software is also shipped with the commercial optical projection tomography scanner (www.bioptonics.com) under the BioptonicsViewer name and is used by many scientists worldwide. Development of visualization, quantification and data management tools for confocal microscopy and optical projection tomography images. Created the VolViewer (www.volviewer.org) volume rendering framework for use in the lab. The software is also shipped with the commercial optical projection tomography scanner (www.bioptonics.com) under the BioptonicsViewer name and is used by many scientists worldwide.
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Education
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Bsc, Msc, PhD
Community
