Guillaume Madignier

Engineer in bioinformatics at Toulouse INP - Institut National Polytechnique de Toulouse
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Contact Information
us****@****om
(386) 825-5501
Location
Toulouse, Occitanie, France, FR
Languages
  • Français Native or bilingual proficiency
  • Anglais Professional working proficiency
  • Allemand Limited working proficiency
  • Espagnol Elementary proficiency

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Credentials

  • TOEFL (ITP)
    -
    Jan, 2018
    - Oct, 2024

Experience

  • Toulouse INP
    • France
    • Higher Education
    • 100 - 200 Employee
    • Engineer in bioinformatics
      • Nov 2020 - Present

      UMR 990 INRA / Toulouse-INP Laboratory Genomics and Biotechnology of the Fruits ► Bioinformatics and web development of data mining tools (tomato, grapevine) on TomExpress, a public transcriptional database for tomato. ► Development of bioinformatic pipelines with Nextflow. ► Development of analysis and visualization tools (frontEnd) [Stimulus JS, VueJS]. ► Development of website structure, database and web servers (backEnd) [Symfony 4]. ► Teach courses on RNAseq (Labex TULIP International Master) and Python for bioinformatics (ENSAT 2nd year engineers). Show less

  • INRA French National Institute for Agricultural Research
    • France
    • Research
    • 700 & Above Employee
    • Engineer in bioinformatics
      • Dec 2019 - Sep 2020

      UMR 990 INRA / Toulouse-INP Laboratory Genomics and Biotechnology of the Fruits UR875 INRA MIAT Unité de Mathématiques et Informatique Appliquées de Toulouse ► Bioinformatics and web development with the framework Symfony 4 ► Building bioinformatic pipelines for ChIPseq, BiSeq and RNAseq data treatment and analysis. ► Development of a web tool for epigenetic data visualization in the platform TomExpress (Tomato genetic ressources), based on IGVweb JavaScript library. UMR 990 INRA / Toulouse-INP Laboratory Genomics and Biotechnology of the Fruits UR875 INRA MIAT Unité de Mathématiques et Informatique Appliquées de Toulouse ► Bioinformatics and web development with the framework Symfony 4 ► Building bioinformatic pipelines for ChIPseq, BiSeq and RNAseq data treatment and analysis. ► Development of a web tool for epigenetic data visualization in the platform TomExpress (Tomato genetic ressources), based on IGVweb JavaScript library.

  • Institut de Génétique Moléculaire de Montpellier (IGMM)
    • Research
    • 1 - 100 Employee
    • Laboratory intern
      • Feb 2019 - Aug 2019

      CNRS - UMR 5535 Laboratory "Transcription and Epigenomics in developing T cells" - Bioinformatics Research of insertions linked to cancer and associated to neomorphic regulatory sequences in lymphoid line of blood cells ► Development of the bioinformatic pipeline TSAIMO - a tool to Target Somatically Acquired Insertions that Misregulate Oncogenes ► Prospection of novel therapeutic targets against Acute Lymphoblastic Leukemia (ALL) in lymphoid lineage over cell differenciation ► The pipeline is coded in bash, python and R. Designed for usage on a HPC cluster. Show less

  • Laboratoire des Substances BioActives (Centre de biotechnologie de Borj-Cédria)
    • Borj-Cédria, Tunisia
    • Laboratory Intern
      • Jun 2018 - Sep 2018

      ► Caracterisation of phytopathogens fungal strains of legumes (phenotype and pathogenicity) ► Establishment of a data base on phytopathogens of Medicago in Tunisia on QGIS 3.2 ► Study of potential eliciting bacteria on natural defenses of Medicago truncatula and its effect on the plant-pathogen interaction ► Caracterisation of phytopathogens fungal strains of legumes (phenotype and pathogenicity) ► Establishment of a data base on phytopathogens of Medicago in Tunisia on QGIS 3.2 ► Study of potential eliciting bacteria on natural defenses of Medicago truncatula and its effect on the plant-pathogen interaction

  • DuPont Pioneer
    • 31840 Aussone, Haute-Garonne
    • Company wide project - confidential
      • Oct 2017 - Jan 2018

      ► Market survey in France ► Edition of commercial documents for Pioneer experts and farmers ► Construction of a network of economical stakeholders ► Market survey in France ► Edition of commercial documents for Pioneer experts and farmers ► Construction of a network of economical stakeholders

  • EARL Armand Landmann
    • 67680 Nothalten, Bas-Rhin
    • Discovery and analysis of the farming operating system
      • Oct 2016 - Jul 2017

      Work in a wine farm for 6 weeks ► Participation of farm labor (from vine culture to bottling process) ► Produced a study on the position of the farm on local market ► Produced a technical and economical diagnosis on the Riesling of Muenchberg terroir ► Produced a financial diagnosis of the farm ► Produced an environmental diagnosis of the farm with an evaluation of the impact on local environment Work in a wine farm for 6 weeks ► Participation of farm labor (from vine culture to bottling process) ► Produced a study on the position of the farm on local market ► Produced a technical and economical diagnosis on the Riesling of Muenchberg terroir ► Produced a financial diagnosis of the farm ► Produced an environmental diagnosis of the farm with an evaluation of the impact on local environment

Education

  • AGRO Toulouse-Ecole Nationale Supérieure Agronomique de Toulouse-ENSAT
    Equivalent to Master's degree, Bioinformatics
    2016 - 2019
  • Institut national des Sciences appliquées de Toulouse
    BioComp Specialization, Computational Biology applied to biotechnologies
    2018 - 2019
  • Lycée Victor Hugo, Besançon
    CPGE - BCPST
    2014 - 2016
  • Lycée Lambert, Mulhouse
    Baccalauréat S mention très bien, Filière Scientifique
    2011 - 2014

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