David Baugher
Computational Biologist II at VantAI- Claim this Profile
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English -
Topline Score
Bio
Experience
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VantAI
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United States
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Biotechnology
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1 - 100 Employee
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Computational Biologist II
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May 2023 - Present
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SomaLogic
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United States
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Biotechnology
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300 - 400 Employee
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Scientist I - Bioinformatics
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Mar 2022 - Dec 2022
- SOTA structure-based protein-protein interaction site prediction, utilizing GNNs and PBD complexes - Structure analysis of successful vs unsuccessful aptamer experiments - Meta-learning for proteomics disease prediction - GNN models for disease classification on proteomic network data - Curation of proteomics datasets for disease prediction - Creation of processing/cleaning pipeline for protein structure data - Creation of bespoke protein structure datasets utilizing PDBBind and RCSB GraphQL data sources - Research into and documentation of new machine learning methodologies Show less
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NExTNet Inc.
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United States
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Biotechnology Research
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1 - 100 Employee
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Bioinformatics Data Scientist
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Sep 2021 - Mar 2022
- Graph-based Algorithm Design for NLP Literature Metrics, Graph Search, and Insight Generation - GSEA and Graph-based Gene Pathway Analysis - NLP Pipeline Development - Bioinformatics Data Curation and Graph Integration - Graph-based Algorithm Design for NLP Literature Metrics, Graph Search, and Insight Generation - GSEA and Graph-based Gene Pathway Analysis - NLP Pipeline Development - Bioinformatics Data Curation and Graph Integration
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iTherapy, LLC
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United States
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Staffing and Recruiting
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1 - 100 Employee
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Data Scientist
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Oct 2020 - Dec 2021
- Software Development for Assistive Language Acquisition - Development of Speech Language Acquisition Metrics Including IPSyn - Assisting in Development of Speech Isolation and Identification Algorithms - Development of Language Acquisition Recommendation Systems - Software Development for Assistive Language Acquisition - Development of Speech Language Acquisition Metrics Including IPSyn - Assisting in Development of Speech Isolation and Identification Algorithms - Development of Language Acquisition Recommendation Systems
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Aperiomics
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United States
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Biotechnology
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1 - 100 Employee
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Data Scientist
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May 2019 - Oct 2020
- NLP(Natural Language Processing) of Medical Literature for Microorganism Summary Data and Pathogen Detection - Machine Learning for Metagenomic Analysis - Application Development in Django for Clinician Curation of NLP Data - Database Architecture Using PostgreSQL, Mongo, and Neo4j - First Author on Paper: Female Urinary Microbiome Analysis and Artificial Intelligence Enhances the Infectious Diagnostic Yield in Precision Medicine, Microbiology and Infectious Disease, June 2021 - Trained in Illumnia NGS data QC as Bioinformatics backup - Data Science Intern Mentor Show less
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Diamond Voice
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United States
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Telecommunications
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1 - 100 Employee
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Programmer, Support Technician
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Feb 2015 - Apr 2019
- Programming Software Applications - Data Analysis and Manipulation using Python, SQL, and Excel - Maintaining and Installing Networking Systems - Providing Technical Support for Clients - Programming Software Applications - Data Analysis and Manipulation using Python, SQL, and Excel - Maintaining and Installing Networking Systems - Providing Technical Support for Clients
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Chevron
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United States
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Oil and Gas
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700 & Above Employee
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Technical Computing Intern
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Jun 2011 - Aug 2011
- Debugged SegyTool Software - Trained in Geologic Software Suites; Petrel, EPOS, and Seisworks - Manipulated Geophysical Data; Seismic Balancing, 2D Data Loading, 3D Data Loading, - Data QC, and Gridding - Debugged SegyTool Software - Trained in Geologic Software Suites; Petrel, EPOS, and Seisworks - Manipulated Geophysical Data; Seismic Balancing, 2D Data Loading, 3D Data Loading, - Data QC, and Gridding
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Luminant
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Manufacturing
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1 - 100 Employee
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Geology Intern
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May 2009 - Aug 2009
- Supervised Drill Rig Core Extraction - Modeled Geologic Structures with AutoCad - Collected, Interpreted, and Cataloged Data; Well Logs and Lithology Logs - Supervised Drill Rig Core Extraction - Modeled Geologic Structures with AutoCad - Collected, Interpreted, and Cataloged Data; Well Logs and Lithology Logs
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Education
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Georgia Institute of Technology
Master's degree, Computer Science -
Udacity
Machine Learning Engineer Nanodegree -
Texas A&M University
Bachelor of Applied Science (B.A.Sc.), Applied Mathematics -
Texas A&M University
Bachelor of Applied Science (B.A.Sc.), Geophysics and Seismology