David Baugher

Computational Biologist II at VantAI
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Contact Information
us****@****om
(386) 825-5501
Location
Longmont, Colorado, United States, US
Languages
  • English -

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Experience

    • United States
    • Biotechnology
    • 1 - 100 Employee
    • Computational Biologist II
      • May 2023 - Present
    • United States
    • Biotechnology
    • 300 - 400 Employee
    • Scientist I - Bioinformatics
      • Mar 2022 - Dec 2022

      - SOTA structure-based protein-protein interaction site prediction, utilizing GNNs and PBD complexes - Structure analysis of successful vs unsuccessful aptamer experiments - Meta-learning for proteomics disease prediction - GNN models for disease classification on proteomic network data - Curation of proteomics datasets for disease prediction - Creation of processing/cleaning pipeline for protein structure data - Creation of bespoke protein structure datasets utilizing PDBBind and RCSB GraphQL data sources - Research into and documentation of new machine learning methodologies Show less

    • United States
    • Biotechnology Research
    • 1 - 100 Employee
    • Bioinformatics Data Scientist
      • Sep 2021 - Mar 2022

      - Graph-based Algorithm Design for NLP Literature Metrics, Graph Search, and Insight Generation - GSEA and Graph-based Gene Pathway Analysis - NLP Pipeline Development - Bioinformatics Data Curation and Graph Integration - Graph-based Algorithm Design for NLP Literature Metrics, Graph Search, and Insight Generation - GSEA and Graph-based Gene Pathway Analysis - NLP Pipeline Development - Bioinformatics Data Curation and Graph Integration

    • United States
    • Staffing and Recruiting
    • 1 - 100 Employee
    • Data Scientist
      • Oct 2020 - Dec 2021

      - Software Development for Assistive Language Acquisition - Development of Speech Language Acquisition Metrics Including IPSyn - Assisting in Development of Speech Isolation and Identification Algorithms - Development of Language Acquisition Recommendation Systems - Software Development for Assistive Language Acquisition - Development of Speech Language Acquisition Metrics Including IPSyn - Assisting in Development of Speech Isolation and Identification Algorithms - Development of Language Acquisition Recommendation Systems

    • United States
    • Biotechnology
    • 1 - 100 Employee
    • Data Scientist
      • May 2019 - Oct 2020

      - NLP(Natural Language Processing) of Medical Literature for Microorganism Summary Data and Pathogen Detection - Machine Learning for Metagenomic Analysis - Application Development in Django for Clinician Curation of NLP Data - Database Architecture Using PostgreSQL, Mongo, and Neo4j - First Author on Paper: Female Urinary Microbiome Analysis and Artificial Intelligence Enhances the Infectious Diagnostic Yield in Precision Medicine, Microbiology and Infectious Disease, June 2021 - Trained in Illumnia NGS data QC as Bioinformatics backup - Data Science Intern Mentor Show less

    • United States
    • Telecommunications
    • 1 - 100 Employee
    • Programmer, Support Technician
      • Feb 2015 - Apr 2019

      - Programming Software Applications - Data Analysis and Manipulation using Python, SQL, and Excel - Maintaining and Installing Networking Systems - Providing Technical Support for Clients - Programming Software Applications - Data Analysis and Manipulation using Python, SQL, and Excel - Maintaining and Installing Networking Systems - Providing Technical Support for Clients

    • United States
    • Oil and Gas
    • 700 & Above Employee
    • Technical Computing Intern
      • Jun 2011 - Aug 2011

      - Debugged SegyTool Software - Trained in Geologic Software Suites; Petrel, EPOS, and Seisworks - Manipulated Geophysical Data; Seismic Balancing, 2D Data Loading, 3D Data Loading, - Data QC, and Gridding - Debugged SegyTool Software - Trained in Geologic Software Suites; Petrel, EPOS, and Seisworks - Manipulated Geophysical Data; Seismic Balancing, 2D Data Loading, 3D Data Loading, - Data QC, and Gridding

    • Manufacturing
    • 1 - 100 Employee
    • Geology Intern
      • May 2009 - Aug 2009

      - Supervised Drill Rig Core Extraction - Modeled Geologic Structures with AutoCad - Collected, Interpreted, and Cataloged Data; Well Logs and Lithology Logs - Supervised Drill Rig Core Extraction - Modeled Geologic Structures with AutoCad - Collected, Interpreted, and Cataloged Data; Well Logs and Lithology Logs

Education

  • Georgia Institute of Technology
    Master's degree, Computer Science
    2018 - 2021
  • Udacity
    Machine Learning Engineer Nanodegree
    2016 - 2016
  • Texas A&M University
    Bachelor of Applied Science (B.A.Sc.), Applied Mathematics
    2008 - 2011
  • Texas A&M University
    Bachelor of Applied Science (B.A.Sc.), Geophysics and Seismology
    2008 - 2011

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