Sridevi Kayyur Subramanya

Data Scientist at Navigate BioPharma Services, Inc.
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Contact Information
us****@****om
(386) 825-5501
Location
Carlsbad, California, United States, US

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Experience

    • United States
    • Biotechnology Research
    • 1 - 100 Employee
    • Data Scientist
      • Oct 2022 - Present

    • Scientist (Bioinformatics)
      • Jun 2022 - Oct 2022

    • Associate Scientist (Bioinformatics)
      • Oct 2021 - May 2022

    • United States
    • Hospitals and Health Care
    • 700 & Above Employee
    • Laboratory Technician II (Bioinformatics)
      • Jan 2021 - Aug 2021

      Designed a workflow for aligning the single-cell RNAseq samples using CellRanger and STAR. Independently worked on creating a data summarization/ visualization to assess the quality of data and alignment using Seurat/R/Rmd. Designed a workflow for aligning the single-cell RNAseq samples using CellRanger and STAR. Independently worked on creating a data summarization/ visualization to assess the quality of data and alignment using Seurat/R/Rmd.

    • United States
    • Higher Education
    • 700 & Above Employee
    • Graduate Research Assistant under Dr. Feng Cui, Associate Professor at RIT
      • May 2020 - Jul 2021

      Thesis (Project 2) - Deep Learning Models to Characterize Smooth Muscle Fibers in Hematoxylin and Eosin Stained Histopathological Images of the Urinary Bladder. Two methodologies were compared and contrasted; patch-based approach (CNN models like ResNet18, AlexNet, SqueezeNet) and pixel-based approach (like Unet, MaNet, DeepLabV3+). Project 1 - I have also worked on determining nucleosome occupancy for different human transcription factors using ChIP-seq and MNase-seq data in python… Show more Thesis (Project 2) - Deep Learning Models to Characterize Smooth Muscle Fibers in Hematoxylin and Eosin Stained Histopathological Images of the Urinary Bladder. Two methodologies were compared and contrasted; patch-based approach (CNN models like ResNet18, AlexNet, SqueezeNet) and pixel-based approach (like Unet, MaNet, DeepLabV3+). Project 1 - I have also worked on determining nucleosome occupancy for different human transcription factors using ChIP-seq and MNase-seq data in python using pysam, pandas, and numpy packages in the linux environment.

    • Graduate Teaching Assistant
      • Aug 2019 - Dec 2020

      Worked as a graduate teaching assistant (GTA) faculty for General biology laboratory, with 25 undergraduate students. Responsibilities involved teaching basic concepts of general biology, demonstrate the lab exercises, in short, assist all students in the lab activity, and explain the outcomes (either positive/negative results). Every class, students were evaluated on their understanding in the previous class.

    • India
    • Business Consulting and Services
    • 700 & Above Employee
    • Risk Analyst
      • Dec 2017 - Nov 2018

      I was a part of the Risk and Compliance team, working on building and customizing risk assessment tools for clients based on their requirements and also train their employees on the usage of the tool. I was a part of the Risk and Compliance team, working on building and customizing risk assessment tools for clients based on their requirements and also train their employees on the usage of the tool.

    • India
    • IT Services and IT Consulting
    • 700 & Above Employee
    • Project Engineer
      • Oct 2015 - Dec 2017

      I was initially trained on JAVA, Python, HTML, JAVA scripts, and RDBMS. Later, I worked as a Project Engineer in the Risk Intelligence team for a US pharmaceutical client and helped them in building a user-friendly interface and train employees to perform various assessments involved in CIA (Confidentiality, Integrity, and Availability) principles like risk assessments, vendor assessments, etc. I was initially trained on JAVA, Python, HTML, JAVA scripts, and RDBMS. Later, I worked as a Project Engineer in the Risk Intelligence team for a US pharmaceutical client and helped them in building a user-friendly interface and train employees to perform various assessments involved in CIA (Confidentiality, Integrity, and Availability) principles like risk assessments, vendor assessments, etc.

Education

  • Rochester Institute of Technology
    Master's degree, Bioinformatics
    2019 - 2021
  • PESIT
    Bachelor of Engineering (B.E.), Biotechnology
    2011 - 2015
  • New Public High School,Bangalore,India
    Schooling
    1995 - 2008

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