Thomas Colligan
Faculty Specialist at University of Maryland – College of Computer, Mathematical, and Natural Sciences- Claim this Profile
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Bio
Experience
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University of Maryland – College of Computer, Mathematical, and Natural Sciences
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United States
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Higher Education
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1 - 100 Employee
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Faculty Specialist
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Jun 2023 - Present
Write code to maintain and improve data pipelines for large-scale climate modeling. Write code to maintain and improve data pipelines for large-scale climate modeling.
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University of Arizona
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United States
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Higher Education
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700 & Above Employee
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Data Scientist
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Jan 2021 - Jan 2023
I was a senior staff member of an academic lab focused on solving problems in bioinformatics while producing top-notch software. My part involved using NLP techniques like LLMs to create sensitive embeddings for multi-domain proteins. I also advised students, which was very rewarding. I worked on a multitude of projects, but I'm most proud of an end-to-end deep learning sound classification tool and two Python tools I wrote that enable fast and reproducible machine learning. I was a senior staff member of an academic lab focused on solving problems in bioinformatics while producing top-notch software. My part involved using NLP techniques like LLMs to create sensitive embeddings for multi-domain proteins. I also advised students, which was very rewarding. I worked on a multitude of projects, but I'm most proud of an end-to-end deep learning sound classification tool and two Python tools I wrote that enable fast and reproducible machine learning.
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University of Montana
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United States
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Higher Education
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700 & Above Employee
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Graduate Research And Teaching Assistant
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May 2018 - Dec 2020
My thesis involved using computer vision to map irrigation in satellite imagery across Montana. I was also part of UM BRIDGES, a program focused on training future leaders from diverse backgrounds to advance societally-relevant science toward more sustainable food-energy-water (FEW) systems. Through this, I received a NSF National Research Traineeship, and got an internship with MPG Ranch, a nonprofit focused on conservation research, outreach, and education. My thesis involved using computer vision to map irrigation in satellite imagery across Montana. I was also part of UM BRIDGES, a program focused on training future leaders from diverse backgrounds to advance societally-relevant science toward more sustainable food-energy-water (FEW) systems. Through this, I received a NSF National Research Traineeship, and got an internship with MPG Ranch, a nonprofit focused on conservation research, outreach, and education.
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Montana Space Grant Consortium
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United States
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Space Research and Technology
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1 - 100 Employee
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Intern
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May 2016 - Nov 2020
I was a research intern with MSGC, a branch of NASA's National Space Grant program. In this role, I led development, research, and analysis efforts to produce software that detects gravity waves in radiosonde profiles. I was lucky enough to observe two total solar eclipses (one that was in Chile!) and launch weather balloons during them. We published two papers related to this work, and I was the technical leader of both of them. We developed a lot of Python and MATLAB code. I was a research intern with MSGC, a branch of NASA's National Space Grant program. In this role, I led development, research, and analysis efforts to produce software that detects gravity waves in radiosonde profiles. I was lucky enough to observe two total solar eclipses (one that was in Chile!) and launch weather balloons during them. We published two papers related to this work, and I was the technical leader of both of them. We developed a lot of Python and MATLAB code.
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Intern
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May 2018 - Feb 2019
MPG Ranch is a nonprofit focused on research, education, and outreach. I worked with senior members of the organization to come up with a proof-of-concept fish classification pipeline using deep learning and other computer vision techniques. I designed the experiment, collected data, wrote the analysis code, and cleanly presented results. Used class-activation mapping and pretrained CNNs to make an extremely accurate fish species classifier. MPG Ranch is a nonprofit focused on research, education, and outreach. I worked with senior members of the organization to come up with a proof-of-concept fish classification pipeline using deep learning and other computer vision techniques. I designed the experiment, collected data, wrote the analysis code, and cleanly presented results. Used class-activation mapping and pretrained CNNs to make an extremely accurate fish species classifier.
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Education
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University of Montana
Master of Science - MS, Computer Science -
University of Montana
Bachelor of Arts - BA, Physics