Thomas Colligan

Faculty Specialist at University of Maryland – College of Computer, Mathematical, and Natural Sciences
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Contact Information
us****@****om
(386) 825-5501
Location
Missoula, Montana, United States, US

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Bio

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Experience

    • Faculty Specialist
      • Jun 2023 - Present

      Write code to maintain and improve data pipelines for large-scale climate modeling. Write code to maintain and improve data pipelines for large-scale climate modeling.

    • United States
    • Higher Education
    • 700 & Above Employee
    • Data Scientist
      • Jan 2021 - Jan 2023

      I was a senior staff member of an academic lab focused on solving problems in bioinformatics while producing top-notch software. My part involved using NLP techniques like LLMs to create sensitive embeddings for multi-domain proteins. I also advised students, which was very rewarding. I worked on a multitude of projects, but I'm most proud of an end-to-end deep learning sound classification tool and two Python tools I wrote that enable fast and reproducible machine learning. I was a senior staff member of an academic lab focused on solving problems in bioinformatics while producing top-notch software. My part involved using NLP techniques like LLMs to create sensitive embeddings for multi-domain proteins. I also advised students, which was very rewarding. I worked on a multitude of projects, but I'm most proud of an end-to-end deep learning sound classification tool and two Python tools I wrote that enable fast and reproducible machine learning.

    • United States
    • Higher Education
    • 700 & Above Employee
    • Graduate Research And Teaching Assistant
      • May 2018 - Dec 2020

      My thesis involved using computer vision to map irrigation in satellite imagery across Montana. I was also part of UM BRIDGES, a program focused on training future leaders from diverse backgrounds to advance societally-relevant science toward more sustainable food-energy-water (FEW) systems. Through this, I received a NSF National Research Traineeship, and got an internship with MPG Ranch, a nonprofit focused on conservation research, outreach, and education. My thesis involved using computer vision to map irrigation in satellite imagery across Montana. I was also part of UM BRIDGES, a program focused on training future leaders from diverse backgrounds to advance societally-relevant science toward more sustainable food-energy-water (FEW) systems. Through this, I received a NSF National Research Traineeship, and got an internship with MPG Ranch, a nonprofit focused on conservation research, outreach, and education.

    • United States
    • Space Research and Technology
    • 1 - 100 Employee
    • Intern
      • May 2016 - Nov 2020

      I was a research intern with MSGC, a branch of NASA's National Space Grant program. In this role, I led development, research, and analysis efforts to produce software that detects gravity waves in radiosonde profiles. I was lucky enough to observe two total solar eclipses (one that was in Chile!) and launch weather balloons during them. We published two papers related to this work, and I was the technical leader of both of them. We developed a lot of Python and MATLAB code. I was a research intern with MSGC, a branch of NASA's National Space Grant program. In this role, I led development, research, and analysis efforts to produce software that detects gravity waves in radiosonde profiles. I was lucky enough to observe two total solar eclipses (one that was in Chile!) and launch weather balloons during them. We published two papers related to this work, and I was the technical leader of both of them. We developed a lot of Python and MATLAB code.

    • Intern
      • May 2018 - Feb 2019

      MPG Ranch is a nonprofit focused on research, education, and outreach. I worked with senior members of the organization to come up with a proof-of-concept fish classification pipeline using deep learning and other computer vision techniques. I designed the experiment, collected data, wrote the analysis code, and cleanly presented results. Used class-activation mapping and pretrained CNNs to make an extremely accurate fish species classifier. MPG Ranch is a nonprofit focused on research, education, and outreach. I worked with senior members of the organization to come up with a proof-of-concept fish classification pipeline using deep learning and other computer vision techniques. I designed the experiment, collected data, wrote the analysis code, and cleanly presented results. Used class-activation mapping and pretrained CNNs to make an extremely accurate fish species classifier.

Education

  • University of Montana
    Master of Science - MS, Computer Science
    2018 - 2020
  • University of Montana
    Bachelor of Arts - BA, Physics
    2013 - 2018

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