Scientist Bioinformatics

• Aug 2020 - Present

Project Scientist

• Mar 2014 - Apr 2019

Whole transcriptome analysis including quality assessment, De novo assembly, ORF predictionand annotation, GO and pathway identification, differential expresssion between control vstreated, SSR identification of whole transcriptome data of mammal.Whole genome analysis including assembly of high quality data using Velvet Assembler (version1.2.10), CDS identification using Prodigal tool along with other analysis of bacterial strain.16S/18S analysis including demultiplexing and quality filtering, OTU picking, taxonomicassignment, and phylogenetic reconstruction, and diversity analyses and visualizations of fungal,viral, bacterial, and archaeal communities using QIIME (Quantitative Insights Into MicrobialEcology).Whole metagenome analysis of soil samples using CLC Genomics Workbench, MG-RAST webserver and MEGAN tool.

Bioinformatics Analyst

• Feb 2013 - Mar 2014

Reference based transcriptome analysis and subsequent time based expression profiling of 3varieties of peppers fruit, Capsicum annuum.De novo assembly of whole-genome shotgun (WGS) sequencing reads of Shrimp genome usingdifferent softwares like FASTQC, PRINSEQ, SOAPdenovo etc. De novo RNA-Seq analysis including quality assessment, assembly, alignment, transcripts andgene quantifcation, differential gene expression and downstream analysis like GO and pathwayidentification, endosymbionts sequence identification, SSR identification of the Russsian wheataphid (RWA), Diuraphis noxia (Kurdjumov), a worldwide pest of cereals.

Next Generation Sequencing / Bioinformatics Trainee

• May 2012 - Jan 2013

NGS : RNASeq and DNASeq, Denovo Assembly data analysis. NGS : RNASeq and DNASeq, Denovo Assembly data analysis.

PERL Developer

• Sep 2011 - Mar 2012