Doctoral Researcher

• Mar 2020 - Present

Basic NGS (DNAseq - WGS, WES), Microarray analysis (CNV & Illumina based SNPs), Metagenomics (TopHAT, STAR, HISAT2, Trinity, Kallisto). Variant filtration, Annotation [ANNOVAR, VEP, SnpEff, genotype-phenotype db's]. Bioinformatics databases: NCBI, ENA, SRA, GEO, KEGG, TCGA. NGS pipeline tools/db's (FASTQ, BAM tools, SAM tools,Picard, Bed files,Vardict/Freebayes, IGV, IGV, UCSC, Galaxyweb), dbSNP, Clinvar, GWAS, GATK,1000Genome, SNPedia, SIFT, Polyphen Variant prioritization, Data curation and literature mining for Genomics. Statistical Skills: PCA, regression models, classification and clustering, multivariate and time-series analysis. Programming Skills: Python Programming (Pandas, SciPY, regular expression, scripting) Shell Scripting (grep, awk, sed, bash scripting), Linux OS, RDBMS and SQL database. Show less